Chemistry notes
Chemistry notes
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Chemistry notes
Chemistry
 
 
 MATTER anything that takes up space and has mass
 
 Made of ELEMENTS -can’t be broken down to other substances by chemical reactions
 • 92 naturally occurring elements
 • Each has a unique symbol (usually first one or two letters of name)
 
 • Some symbols dervived from Latin EX: Sodium = Na (from Latin natrium)
 
 • 25 chemical elements are essential to life.
 
 • Four elements—carbon (C), oxygen (O), hydrogen (H), and nitrogen (N) = 96% of living matter
- • Other 4% of organism’s weight = phosphorus (P), sulfur (S), calcium (Ca), and potassium (K)
• TRACE elements =required in minute quantities
- • Some required by all organisms EX: iron (Fe)
- • Others only required by some species
- EX: humans need 0.15 mg Iodine (I) daily for normal thyroid gland function
 ATOMS made of SUBATOMIC PARTICLES
ATOMS made of SUBATOMIC PARTICLES
  Each kind of atom has a specific number of protons, neutrons, and electrons
| SUBATOMIC | Electric charge | Mass | Location | 
| Proton | + | 1 dalton | In nucleus | 
| Neutron | _ | 1 dalton | In nucleus | 
| Electron | 0 | negligible | Orbit nucleus in energy levels | 
 Elements in same row have  same # of electrons in their outer shells
Elements in same row have  same # of electrons in their outer shells
- • As move from left to right, one  proton & one electron are 
 added to preceding element
 
 • Atoms are electrically NEUTRAL (protons =electrons)
 
 • Atoms that have gained or lost electrons = IONS
 
 
 
| USES OF    RADIOACTIVE ISOTOPES : | 
= number of protons
  
  
  
  = number of protons + neutrons 
  
  ATOMIC MASS (1  dalton = 1 amu) 
  
- Elements  occur in nature as a mixture of ISOTOPES 
 ISOTOPES = atoms with the same number of protons
 but differ in number of neutrons
 EX: 14C , 13C, and 12 C all have 6 protons & 6 electrons,
 but different numbers of neutrons
 Most isotopes are stable (EX: 12C and 13C)
 but some are radioactive (14C)
ENERGY LEVELS – 3-D space where electrons are found = ORBITAL
• Level  closest to nucleus = lowest energy; outer levels have more energy
  1st level- 1 orbital holds 2  electrons
  2nd level- 4 orbitals hold 8  electrons
  3rd and higher levels- hold  increasing numbers of electrons 
- EX: Lithium (3 ELECTRONS) has two in the first shell; one in second shell
- Neon (10 electrons) has two in the first shell; eight in second shell
  CHEMICAL BEHAVIOR depends on number of electrons in OUTERMOST SHELL (=VALENCE  electrons)
    • Atoms with the  same number of valence electrons have similar chemical behaviors 
      • Atom  with a completed valence shell = nonreactive (EX: neon)
        • Atoms with incomplete  valence shells  = chemically reactive
          • Atoms can give up, accept,  or share electrons in order to have a stable outer shell 
| 
 ELEMENT | # of  | 
| Hydrogen | 1 | 
| Oxygen | 2 | 
| Carbon | 4 | 
| Nitrogen | 3 | 
| Phosphorus | 5 | 
| Sulfur | 2 | 
MOLECULES= two or more  atoms of SAME or DIFFERENT elements bonded together (EX: O2)
  COMPOUNDS =  two or more DIFFERENT  elements bonded together  (EX: H2O)
  
  CHEMICAL FORMULA = recipe; tells which kinds of atoms  and how many 
  EX: H20 = TWO Hydrogen  atoms and 1 oxygen atom
          *change in  characteristics when elements combine = EMERGENT property
TYPES OF BONDS
 1)  COVALENT: share electrons
1)  COVALENT: share electrons
  • SINGLE-  share a PAIR of electrons (shown as single dash H-O-H)
    • DOUBLE- share  TWO PAIRS of electrons (shown as C=C)
      • TRIPLE-  share THREE PAIRS of electrons (shown as  )
)
        
    POLAR COVALENT BONDS  -  sharing  of electrons = unequal;   
        seen in atoms with differences in  electronegativity  
        one atom slightly more positive/other  more negativity
        
        NONPOLAR COVALENT BONDS- EX:  methane
        electron sharing is equally distributed
  
2) IONIC BONDS: 
  electrons are transferred from one  atom to another (CATION =+    ANION =-)
  +/- partners (IONS) are held together by attraction between opposite  charges     
  EX: table salt (NaCl)   Sodium loses one  electron; Chlorine picks up one electron
 
 
  3) HYDROGEN BONDS: weak attraction  between molecules or parts of same molecule 
    • slightly  positive hydrogen atom of one molecule attracted to slightly negative atom in  another
    EX:  water molecule- electrons spend more time  orbiting oxygen than hydrogens  
   so oxygen  becomes slightly negative and the two hydrogens become slightly positive
4) Van der Waals  Interactions- 
  attractions between ever changing + and - “hot spots” in covalently bonded nonpolar  molecules
  EX: responsible for gecko’s ability  to walk up a wall
* Relative strength of bonds: Covalent > Ionic > Hydrogen bond > Van der Waals forces
Individual bonds (ionic, hydrogen, van der Waals) are weak and temporary, but collectively they are strong and play important biological roles.
CHEMICAL REACTIONS- make and break  chemical bonds
  
    OXIDATION-REDUCTION:
  • Oxidation =  the  loss of electrons (or loss of hydrogen atoms), a molecule that loses an  electron is oxidized
• Reduction = the gain of  electrons (or gain of hydrogen atoms), a molecule that gains an electron is  reduced
• Chemical bonds are broken and reformed/atoms are rearranged.
Reactants → products
• Reactions must be “balanced” –Number and kind of atoms in reactants must = those in products
• Matter is conserved in a chemical reaction
• Chemical reactions rearrange matter; they do not create or destroy matter.
• Some chemical reactions go to completion (all the reactants are converted to products)
• Most chemical reactions = reversible (products in forward reaction become reactants in reverse reaction)
-      EX:   3H2 + N2 <=> 2NH3 
 hydrogen and nitrogen combine to form ammonia, but ammonia can decompose to hydrogen and nitrogen
- Initially, reactant concentrations are high, so they frequently collide to create products
- As products accumulate, they collide to reform reactants
- EQUILIBRIUM
- • RATE of formation of products = the RATE of breakdown of products (RATE NOT CONCENTRATION)
- • Products and reactants are continually being formed, but no net change in their concentrations
- • Concentration of reactants and products typically NOT EQUA; concentrations stabilize at a particular ratio
- MOLECULE’S  BIOLOGICAL FUNCTION  RELATED TO ITS 3-D  SHAPE
 • Molecule with 2 atoms =linear
 • Water molecule is shaped like a V, two covalent bonds are spread apart at 104.5° angle
- • Shape of bigger molecule determined by the positions of the electron orbitals shared by bonded atoms
- • CARBON- Formation of a covalent  bonds leads to hybridization of the orbitals to four new orbitals in a  tetrahedral shape
 • Large organic molecules contain many carbon atoms with repeating tetrahedral pattern
- MOLECULES WIH SIMIALR SHAPES CAN HAVE SIMILAR FUNCTIONS
-   EX: morphine, heroin, and other opiate drugs  = simiilar in shape so they can bind to the same receptors as natural signal 
 molecules called endorphins
- Binding  of endorphins to receptors on brain cells produces euphoria and relieves pain. 
 Opiates mimic these natural endorphin effects.
http://local.brookings.k12.sd.us/krscience/open/chemistryoflife.htm
Source: http://www.biologyjunction.com/chemistry%20notes%20kelly.doc
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